Quantitative Methods in Bioinformatics

Course Information

This course is cross listed as BIOL 337, STAT 337, and STAT 437

Homework: UG Student Groups

Homework 1	Homework 2	Homework 3	Homework 4
Homework 5	Homework 6	Homework 7

Class Notes:

Chap.1	Chap.2	Chap.3	Chap.4	Chap.6	Chap.7
Chap.8	Chap.9	Chap.10	Chap.11		HMMs

Some Articles:

1997 Scientific American
QTLs Wu & Casella

2002 ASA microarrays

Useful Websites:
Course Syllabus
Ends-Space Free Notes
Course Paper-Project

Steve Kachman's Bioinformatics notes

Drosophila p09 Steve's notes

HMM chapter by Krogh (1998)

Wellcome Trust Sanger Institute

PCA and Cluster Analysis for Mammals on p.517

PHYLIP

Images (protein synthesis etc.)

Two DNA sequences from old textbook (p.1) -

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Two amino acid sequences from old textbook (p.258)-

		T	Q	L	A	A	W	C	R	M	T	C	F	E	I	E	C	K	V
		R	H	L	D	S	W	R	R	A	S	D	D	A	R	I	E	E	G
Scores	SN	-1	0	4	-2	1	11	-3	5	-1	1	-3	-3	-1	-3	-3	-4	1	-3
Sum	TN	-1	-1	3	1	2	13	10	15	14	15	12	9	8	5	2	-2	-1	-4

Graph of cumulative scores for above pair of Amino Acids